I.1 Description of KiSThelP Input File format for a molecule (or atom) :
In order to perform a KiSThelP calculation, the user
must prepare a .kinp input file. Alternatively, it is to be noted that KiSThelP can read the needed
electronic structure data directly from a gaussian
output file (g03 or g09 or g16 frequencies job) or
NWChem or GAMESS or ORCA output file as well.
In this case, a .kinp file is automatically built from a single Frequency job. This is the easiest way to build a .kinp file.
KiSThelP needs a Molecular System file (with .kinp file extension)
for the following calculations :
The basic way to provide input data to KiSThelP is by
using an ASCII input file with kinp file extension. KiSThelP typically processes the .kinp input file
to obtain keywords that tell what are the data. The content of this
text file is divided into several different sections. Each section
begins with a specific keyword and ends with the *END keyword. They
represent the categories of input data and are self-explanatory. For a
molecular calculation, 7sections are required: MASS, FREQUENCIES,
NUMBER OF SYMMETRY, LINEAR, MOMENT OF INERTIA, POTENTIAL ENERGY,
ELECTRONIC DEGENERACY. For an atom only 3 sections are expected: MASS, POTENTIAL ENERGY, ELECTRONIC
DEGENERACY. Any text appearing after each
keyword is a comment added to enhance readability. Note that atomic
coordinates are not required.
The sections can appear in any arbitrary order in the input file, however, all sections must be present: 7 for a molecular system, 3 for an atom. Moreover each KEYWORD must start the line. Each section can contain one or more lines of data. Comments outside a *KEYWORD ... *END section are allowed, or even after the KEYWORD (on the same line). Note that keywords are not case-sensitive. But no blank lines are expected within a section. Checks on the consistency of data are made.
KEYWORDS :
MASS
FREQUENCIES
LINEAR
NUMBER
OF SYMMETRY
MOMENT
OF INERTIA
POTENTIAL
ENERGY
DEGENERACY
ELECTRONIC
DIFFERENT SECTIONS :
*MASS
mass of
the system in amu
*END
*FREQUENCIES
list of
vibrational frequency
numbers in cm-1
(one per line)
*END
*LINEAR
only "linear" or "not
linear" text values are allowed
here
*END
*NUMBER
OF SYMMETRY
rotational
symmetry number
*END
*MOMENT
OF INERTIA
list of
moments of inertia in amu bohr**2
*END
*POTENTIAL
ENERGY
electronic
energy in hartree
*END
*ELECTRONIC
DEGENERACY
degeneracy
of the electronic state
*END
****** Remark 1 ******
Though
the "NUMBER OF SYMMETRY" section must always be
given, the reaction path degeneracy (given through GUI) will be
used
instead to
perform rate constant calculations. In this case (rate constant
calculation),
the symetry number is unused in statistical calculations.
****** Remark 2 ******
To account for deviations from the harmonic oscillator, a hindered
rotor approach has been implemented in KiSThelP (HRDS treatment).
To perform such calculation on a selected vibrational mode, a second
parameter (rotational energy barrier in kJ/mol) is required in addition
to the vibrational frequency number. See below Example2.
*********************
EXAMPLE 1 for a
Molecular System (Keywords are in red colour):
*MASS (in amu) A comment can be put here on the
same line
58.04186
*END
Note that
keywords are not case-sensitive and
blank lines
also can be inserted between sections
*Frequencies (in cm-1)
3265.1291
3264.2190
3219.0051
3213.3760
3131.8439
3127.3320
1794.3050
1546.9059
1529.0550
1525.7833
1523.3232
1442.1788
1435.1894
1280.8721
1147.4441
1110.7875
923.3173
915.1324
814.0778
534.8400
487.9528
382.2085
142.1126
57.0465
*END
*LINEAR
not linear
*END
*NUMBER OF SYMMETRY
1
*END
*POTENTIAL ENERGY (in hartree)
-192.57140734712
*END
*MOMENT OF INERTIA (in au)
179.61593
211.03586
368.45898
*END
*ELECTRONIC DEGENERACY
1
*END
KEYWORDS :
MASS
POTENTIAL
ENERGY
DEGENERACY
ELECTRONIC
DIFFERENT SECTIONS :
*MASS
mass of
the system in amu
*END
*POTENTIAL
ENERGY
electronic
energy in hartree
*END
*ELECTRONIC
DEGENERACY
degeneracy
of the electronic state
*END
EXAMPLE for an atom :
*MASS (in amu)
78.91834
*END
*POTENTIAL ENERGY (in hartree)
-192.57140734712
*END
*ELECTRONIC DEGENERACY
2
*END